Public handling: selected full-text prompt with secret filtering.
Prompt Text
Repository: D:\Research\UncertaintyProtein-AI4S. Plan-mode only. Do not edit files, do not run mutating commands. Audit protocol, reproducibility, and reviewer-risk readiness. Read AGENTS.md and default reading docs, plus server runbook, submission checklist, rebuttal notes, tests/configs around paper_main_configs and modern_baselines. Return harness-engineering gaps: missing contracts, tests, run budgets, evidence ledgers, stopping rules, cleanup/documentation needs. Cite file paths.
Reuse Notes
EXTRACTED: This is a selected Codex prompt or automation prompt from the local Codex corpus.
INFERRED: Future agents can reuse its structure, constraints, and acceptance criteria when creating similar Codex workflows.