Public handling: selected full-text prompt with secret filtering.
Prompt Text
Repository: D:\Research\UncertaintyProtein-AI4S. Plan-mode only. Do not edit files, do not run mutating commands. Read AGENTS.md and, if present, the default reading set listed there. Then inspect modules around baselines/external adapters/acquisition/protocol configs/tests. Audit current architecture for implementing eight modern protein optimization baselines. Return: current architecture summary, missing pieces for production-ready baseline implementation, recommended integration points, and risks. Cite absolute or repo-relative file paths.
Reuse Notes
EXTRACTED: This is a selected Codex prompt or automation prompt from the local Codex corpus.
INFERRED: Future agents can reuse its structure, constraints, and acceptance criteria when creating similar Codex workflows.