Public handling: selected full-text prompt with secret filtering.
Prompt Text
Plan-mode read-only audit only. Repo: D:\Research\UncertaintyProtein-AI4S. User wants a major harness-engineering-driven rebuild before server runs: aggressive deletion of redundant files, lower coupling, observation->LoRA/SFT->modern baselines->own method, server-command readiness. Please inspect current repo and produce a concrete delete/keep/restructure recommendation: which tracked docs/configs/experiments are redundant or should be archived/renamed, which current scaffolds are insufficient, and what plan would make this server-ready without mutating files.
Reuse Notes
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INFERRED: Future agents can reuse its structure, constraints, and acceptance criteria when creating similar Codex workflows.