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Prompt Text
Repository: D:\Research\UncertaintyProtein-AI4S. Plan-mode only. Do not edit files, do not run mutating commands. Focus on scientific baseline selection for protein optimization / protein design with uncertainty/active learning. Inspect local docs such as protein_bo_conformal/docs/modern_baseline_report.md, baseline_fairness_policy.md, claim_evidence_matrix.md if present, and use web research if available. Recommend exactly eight baselines defensible against top-conference reviewers, classify which can be locally scaffolded now vs require server/API/model weights, and list citation/implementation risks.
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